EVOLUTIONARY ASPECTS EXPLIOTATION OF CHICKPEA CHLOROTIC DWARF VIRUS (CPCDV)INFECTING COTTON AND CHICKPEA

M ATIF; F AHMAD; MT MANZOOR; K GILANI; Q ALI; M SARWAR; S ANJUM; MW ALAM; A HUSSIAN; N RAFAQAT

doi:10.54112/bcsrj.v2022i1.113

Authors

M ATIF Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab Lahore, Pakistan
F AHMAD School of Food Sciences and Technology, Minhaj University Lahore, Pakistan
MT MANZOOR Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
K GILANI Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore Pakistan
Q ALI Department of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab Lahore, Pakistan
M SARWAR Department of Horticulture, Faculty of Agricultural Sciences, University of the Punjab Lahore, Pakistan
S ANJUM Department of Botany, University of the Punjab, Lahore, Pakistan
MW ALAM Department of Plant Pathology, University of Okara, Okara, Pakistan
A HUSSIAN Department of Agronomy, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
N RAFAQAT Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

DOI:

https://doi.org/10.54112/bcsrj.v2022i1.113

Keywords:

Chickpea Chlorotic Dwarf Virus, mastrevirus, fabaceae, DNA, species

Abstract

The Chickpea Chlorotic Dwarf Virus (CpCDV) has been found highly devastating not only for chickpea
crop but also for lentils, cotton and papaya. In recent past years, this mastrevirus caused a sublime pressure on the
hosts and reduced yield up to 95%. This virus is most prevalence in dry regions and equally important pathogen in
other parts of the world especially in America and Europe. This capability is due to rapid changes in DNA. Vector
species also play an important role in spread of this virus. In our current study the evolutionary study of 53 genomes
was performed. All genomes obtained from cotton crops are ancestors and rest is offsprings. According to our
finding, CpCDV is very important pathogen not only for Fabaceae family but also for Malvaceae family.

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References

Adams. (2005b). Molecular criteria for genus and species descrimination within the family Potyviridae. Archive of virology, 150, 459-479.

Ahmed. (2010). Phylogenetic analysis of Bemisia tabaci (Hemiptera: Aleyrodidae) populations from cotton plants in Pakistan, China, and Egypt . Journal of Pest Science, 14, 135-141.

Balol, G.B., Divya, B.L., Basavaraj, S., Sundaresha, S, Mahesh, Y.S., & Huchannanavar, S.D. (2010). Sources of genetic variation in plant virus populations. Journal of Pure and Applied Microbiology, 4(2), 803-808.

Berriei, L.C., Rybicki, E.P., Rey, M.E.C. (2001). Complete nucleotide sequence and host range of South African cassava mosaic virus: further evidence for recombination amongst Begomoviruses. Journal of General Virology, 82, 53-58.

Biebricher, C.K., & Eigen, M. (2006). ‘What is a Quasispecies?. Current Topics in Microbiology and Immunology, 299, 1–31.

Bonnet, J., Fraile, A., Sacristán, S., Malpica, J.M. &, García-Arenal, F. (2005). Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus. Virology, 332(1) 359-368.

Drake, J.W. (1991). A constant rate of spontaneous mutation in DNA-based microbes. Proceedings of the National Academy of Sciences, 88(16), 7160-7164.

Duffy, S., & Holmes, E.C. (2008). Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus Tomato yellow leaf curl virus. Journal of General Virology, 82, 957-965.

Duffy, S., Shackelton, L.A., & Holmes, E.C. (2008). Rates of evolutionary change in viruses: patterns and determinants. Nature Reverse Genetics, 9, 267-276.

Eigen, M., Winkler-Oswatitsch, R., Dress, A. (1988). Statistical geometry in sequence space: a method of quantitative comparative sequence analysis. Science USA, 85, 5913-5917.

Fan, J., Negroni, M., & Robertson, D.L. (2007). ‘The Distribution of HIV-1 Recombination Breakpoints’. Infection Genetics and Evolution, 7, 717-723.

Ge, L., Zhang, J., Zhou, X., & Li, H. (2007). Genetic structure and population variability of tomato yellow leaf curl China virus. Journal of virology, 81(11), 5902-5907.

Grigoras, I., Timchenko, T., Grande-Pérez, A., Katul, L., Vetten, H.J., & Gronenborn, B. (2010). High variability and rapid evolution of a nanovirus. Journal of virology, 84(18), 9105-9117.

Heath, L., Van Der Walt, E., Varsani, A., & Martin, D.P. (2006). Recombination patterns in aphthoviruses mirror those found in other picornaviruses. Journal of virology, 80(23), 11827-11832.

Holland, J., Spindler, K., Horodyski, F., Grabau, E., Nichol, S., & Vande Pol, S. (1982). Rapid evolution of RNA genomes. Science, 215(4540), 1577-1585.

Jeske, H., Lutgemeier, M., & Preiss, W. (2001). DNA Forms Indicate Rolling Circle and Recombination-Dependent Replication of Abutilon Mosaic Virus, EMBO Journal, 20: 6158-6167.

Kumarvinoth, Tribhuwan, Y.V., & SaumikBasu. (2015). Complexity of Begomovirus and betasatellite populations associated with chili leaf curl disease in India. Journal of General Virology, 96, 3143-3158.

Lefeuvre., & Moriones. (2015). Recombination as a motor of host switches and virus emergence: Geminiviruses as case studies. Current Opinion in Virology,10, 14-19.

Monci, F., Sánchez-Campos, S., Navas-Castillo, J., & Moriones, E. (2002). A natural recombinant between the geminiviruses Tomato yellow leaf curl Sardinia virus and Tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations. Virology, 303(2), 317-326.

Ong, C.A., Varghese, G., & Ting, W.P. (1980). The effect of chilli veinal mottle virus on yield of chilli (Capsicum annuum L. MARDI Research Bulletin., 8(1), 74-78.

Rajamaki, M.L, Maki-Valkama, T., Makinen, K., & Valkonen, J. P. (2009). Infection with potyviruses. Annual Plant Reviews, Plant-Pathogen Interactions, 11, 68.

Sanz, A. I., Fraile, A., Garcı́a-Arenal, F., Zhou, X., Robinson, D. J., Khalid, S., & Harrison, B. D. (2000). Multiple infection, recombination and genome relationships among begomovirus isolates found in cotton and other plants in Pakistan. Journal of General Virology, 81(7), 1839-1849.

Shackelton, & Holmes, E.C. (2006). Phylogenetic Evidence for the Rapid Evolution of Human B19 Erythrovirus. Journal of Virology, 80, 3666-3669.

Shackelton, L.A., Parrish, C.R., Truyen, U., & Holmes, E.C. (2005). High rate of viral evolution associated with the emergence of carnivore parvovirus. Proceedings of the National Academy of Sciences, 102(2), 379-384.

Silva, F.N., Lima, A.T., Rocha, C.S., Castillo-Urquiza, G.P., Alves-Júnior, M., & Zerbini, F.M. (2014). Recombination and pseudorecombination driving the evolution of the begomoviruses Tomato severe rugose virus (ToSRV) and Tomato rugose mosaic virus (ToRMV): two recombinant DNA-A components sharing the same DNA-B. Virology journal, 11(1), 1-11.

Varsani, A., Shepherd, D. N., Monjane, A. L., Owor, B. E., Erdmann, J. B., Rybicki, E. P., ... & Martin, D. P. (2008). Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen. The Journal of general virology, 89(Pt 9), 2063.

Varsani, A., van der Walt, E., Heath, L., Rybicki, E. P., Williamson, A. L., & Martin, D. P. (2006). Evidence of ancient papillomavirus recombination. Journal of General Virology, 87(9), 2527-2531.

Worobey, M., & Holmes, E.C. (1999). Evolutionary Aspects of Recombination in RNA Viruses. Journal of General Virology, 80, 2535-2545.

Zhou, X., Liu, Y., Calvert, L., Munoz, C., Otim-Nape, G.W., Robinson, D.J., & Harrison, B.D. (1997). Evidence that DNA-A of a geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination. Journal General Virology, 78(8), 2101-2111.