BIOLUMINESCENCE SYSTEMS

Authors

  • N Idrees Institute of Molecular Biology & Biotechnology, University of Lahore, Lahore, Pakistan
  • A Siddique Institute of Molecular Biology & Biotechnology, University of Lahore, Lahore, Pakistan
  • A Fateh Institute of Molecular Biology & Biotechnology, University of Lahore, Lahore, Pakistan
  • N Afzal Department of Biotechnology, Virtual University of Pakistan
  • I Ali Department of Microbiology and Molecular Genetics, University of Okara, Pakistan
  • MA Javied Institute of Molecular Biology & Biotechnology, University of Lahore, Lahore, Pakistan
  • Q Ali Institute of Biotechnology and Molecular Biology, The University of Lahore, Lahore
  • A Malik Institute of Molecular Biology & Biotechnology, University of Lahore, Lahore, Pakistan

DOI:

https://doi.org/10.54112/bcsrj.v2020i1.42

Keywords:

Bioluminescence, Luciferase, Luciferin, synthetic biology and imaging

Abstract

Bioluminescence System has been mostly studied in reporter technology. There are forty different bioluminescent systems occurred in nature while there are only seven of these light emitting systems and their biochemical reactions have been studied however the pathway of only two biochemical systems has been understood yet. Here, we have provided an overview for these bioluminescent systems as a tool for researchers working on bioluminescence for better future applications of bioluminescent.

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References

Baker, L. J., Freed, L. L., Easson, C. G., Lopez, J. V., Fenolio, D., Sutton, T. T., Nyholm, S. V., and Hendry, T. A. (2019). Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment. Elife 8, e47606.

Belas, R., Mileham, A., Cohn, D., Hilman, M., Simon, M., and Silverman, M. (1982). Bacterial bioluminescence: isolation and expression of the luciferase genes from Vibrio harveyi. Science 218, 791-793.

Berg, J., Hung, Y. P., and Yellen, G. (2009). A genetically encoded fluorescent reporter of ATP: ADP ratio. Nature methods 6, 161-166.

Bhuckory, S., Kays, J. C., and Dennis, A. M. (2019). In Vivo Biosensing Using Resonance Energy Transfer. Biosensors 9, 76.

Brodl, E., Winkler, A., and Macheroux, P. (2018). Molecular mechanisms of bacterial bioluminescence. Computational and structural biotechnology journal 16, 551-564.

Burakova, L. P., Kudryavtsev, A. N., Stepanyuk, G. A., Baykov, I. K., Morozova, V. V., Tikunova, N. V., Dubova, M. A., Lyapustin, V. N., Yakimenko, V. V., and Frank, L. A. (2015). Bioluminescent detection probe for tick-borne encephalitis virus immunoassay. Analytical and bioanalytical chemistry 407, 5417-5423.

Cannaert, A., Storme, J., Franz, F., Auwärter, V., and Stove, C. P. (2016). Detection and activity profiling of synthetic cannabinoids and their metabolites with a newly developed bioassay. Analytical chemistry 88, 11476-11485.

Carling, P. C., and Huang, S. S. (2013). Improving healthcare environmental cleaning and disinfection current and evolving issues. Infection Control & Hospital Epidemiology 34, 507-513.

Chen, Y., Spiering, A., Karthikeyan, S., Peters, G. W., Meijer, E., and Sijbesma, R. P. (2012). Mechanically induced chemiluminescence from polymers incorporating a 1, 2-dioxetane unit in the main chain. Nature chemistry 4, 559-562.

Chu, J., Oh, Y., Sens, A., Ataie, N., Dana, H., Macklin, J. J., Laviv, T., Welf, E. S., Dean, K. M., and Zhang, F. (2016). A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo. Nature biotechnology 34, 760-767.

Cleary, A. C., Durbin, E. G., and Rynearson, T. A. (2012). Krill feeding on sediment in the Gulf of Maine (North Atlantic). Marine Ecology Progress Series 455, 157-172.

Contag, C. H., and Bachmann, M. H. (2002). Advances in in vivo bioluminescence imaging of gene expression. Annual review of biomedical engineering 4, 235-260.

Contag, C. H., Contag, P. R., and Benaron, D. A. (1997). Non-invasive localization of a light-emitting conjugate in a mammal. Google Patents.

Daniell, H., Lin, C.-S., Yu, M., and Chang, W.-J. (2016). Chloroplast genomes: diversity, evolution, and applications in genetic engineering. Genome biology 17, 134.

Daubner, S. C., Astorga, A. M., Leisman, G. B., and Baldwin, T. O. (1987). Yellow light emission of Vibrio fischeri strain Y-1: purification and characterization of the energy-accepting yellow fluorescent protein. Proceedings of the National Academy of Sciences 84, 8912-8916.

Dixon, A. S., Schwinn, M. K., Hall, M. P., Zimmerman, K., Otto, P., Lubben, T. H., Butler, B. L., Binkowski, B. F., Machleidt, T., and Kirkland, T. A. (2016). NanoLuc complementation reporter optimized for accurate measurement of protein interactions in cells. ACS chemical biology 11, 400-408.

Ellis, E. A., and Oakley, T. H. (2016). High rates of species accumulation in animals with bioluminescent courtship displays. Current Biology 26, 1916-1921.

Frank, L. A., and Krasitskaya, V. V. (2014). Application of enzyme bioluminescence for medical diagnostics. In "Bioluminescence: Fundamentals and Applications in Biotechnology-Volume 1", pp. 175-197. Springer.

Girotti, S., Ferri, E. N., Fumo, M. G., and Maiolini, E. (2008). Monitoring of environmental pollutants by bioluminescent bacteria. Analytica chimica acta 608, 2-29.

Gregor, C., Gwosch, K. C., Sahl, S. J., and Hell, S. W. (2018). Strongly enhanced bacterial bioluminescence with the ilux operon for single-cell imaging. Proceedings of the National Academy of Sciences 115, 962-967.

Gupta, R. K., Patterson, S. S., Ripp, S., Simpson, M. L., and Sayler, G. S. (2003). Expression of the Photorhabdus luminescens lux genes (luxA, B, C, D, and E) in Saccharomyces cerevisiae. FEMS yeast research 4, 305-313.

Haddock, S. H., Moline, M. A., and Case, J. F. (2010). Bioluminescence in the sea. Annual review of marine science 2, 443-493.

Haddock, S. H., Rivers, T. J., and Robison, B. H. (2001). Can coelenterates make coelenterazine? Dietary requirement for luciferin in cnidarian bioluminescence. Proceedings of the National Academy of Sciences 98, 11148-11151.

Hall, M. P., Unch, J., Binkowski, B. F., Valley, M. P., Butler, B. L., Wood, M. G., Otto, P., Zimmerman, K., Vidugiris, G., and Machleidt, T. (2012). Engineered luciferase reporter from a deep sea shrimp utilizing a novel imidazopyrazinone substrate. ACS chemical biology 7, 1848-1857.

Hasson, S. A., Fogel, A. I., Wang, C., MacArthur, R., Guha, R., Heman-Ackah, S., Martin, S., Youle, R. J., and Inglese, J. (2015). Chemogenomic profiling of endogenous PARK2 expression using a genome-edited coincidence reporter. ACS chemical biology 10, 1188-1197.

Huang, Y.-S., Chen, Y.-C., Chen, M.-L., Cheng, A., Hung, I.-C., Wang, J.-T., Sheng, W.-H., and Chang, S.-C. (2015). Comparing visual inspection, aerobic colony counts, and adenosine triphosphate bioluminescence assay for evaluating surface cleanliness at a medical center. American journal of infection control 43, 882-886.

Hwang, E., Song, J., and Zhang, J. (2019). Integration of nanomaterials and bioluminescence resonance energy transfer techniques for sensing biomolecules. Biosensors 9, 42.

Inouye, S., and Shimomura, O. (1997). The Use ofRenillaLuciferase, OplophorusLuciferase, and Apoaequorin as Bioluminescent Reporter Protein in the Presence of Coelenterazine Analogues as Substrate. Biochemical and biophysical research communications 233, 349-353.

Islam, M. N., Das, S. R., Emin, M. T., Wei, M., Sun, L., Westphalen, K., Rowlands, D. J., Quadri, S. K., Bhattacharya, S., and Bhattacharya, J. (2012). Mitochondrial transfer from bone-marrow–derived stromal cells to pulmonary alveoli protects against acute lung injury. Nature medicine 18, 759-765.

James, M. L., and Gambhir, S. S. (2012). A molecular imaging primer: modalities, imaging agents, and applications. Physiological reviews 92, 897-965.

Janicke, T., Ritchie, M. G., Morrow, E. H., and Marie-Orleach, L. (2018). Sexual selection predicts species richness across the animal kingdom. Proceedings of the Royal Society B: Biological Sciences 285, 20180173.

Kaartvedt, S. (2010). Diel vertical migration behaviour of the northern krill (Meganyctiphanes norvegica Sars). In "Advances in Marine Biology", Vol. 57, pp. 255-275. Elsevier.

Kaskova, Z. M., Tsarkova, A. S., and Yampolsky, I. V. (2016). 1001 lights: luciferins, luciferases, their mechanisms of action and applications in chemical analysis, biology and medicine. Chemical Society Reviews 45, 6048-6077.

Ke, D., and Tu, S. C. (2011). Activities, kinetics and emission spectra of bacterial luciferase‐fluorescent protein fusion enzymes. Photochemistry and photobiology 87, 1346-1353.

Kotlobay, A. A., Sarkisyan, K. S., Mokrushina, Y. A., Marcet-Houben, M., Serebrovskaya, E. O., Markina, N. M., Somermeyer, L. G., Gorokhovatsky, A. Y., Vvedensky, A., and Purtov, K. V. (2018). Genetically encodable bioluminescent system from fungi. Proceedings of the National Academy of Sciences 115, 12728-12732.

Krichevsky, A., Meyers, B., Vainstein, A., Maliga, P., and Citovsky, V. (2010). Autoluminescent plants. PloS one 5, e15461.

Li, J.-B., Chen, L., Wang, Q., Liu, H.-W., Hu, X.-X., Yuan, L., and Zhang, X.-B. (2018). A bioluminescent probe for imaging endogenous peroxynitrite in living cells and mice. Analytical chemistry 90, 4167-4173.

Lima, T. M., Procópio, L. C., Brandão, F. D., Leão, B. A., Tótola, M. R., and Borges, A. C. (2011). Evaluation of bacterial surfactant toxicity towards petroleum degrading microorganisms. Bioresource technology 102, 2957-2964.

Lorenz, W. W., McCann, R. O., Longiaru, M., and Cormier, M. J. (1991). Isolation and expression of a cDNA encoding Renilla reniformis luciferase. Proceedings of the National Academy of Sciences 88, 4438-4442.

Meighen, E. A. (1991). Molecular biology of bacterial bioluminescence. Microbiology and Molecular Biology Reviews 55, 123-142.

Mosrin, M., Bresser, T., and Knochel, P. (2009). Regio-and chemoselective multiple functionalization of chloropyrazine derivatives. Application to the synthesis of coelenterazine. Organic Letters 11, 3406-3409.

Newman, R. H., Fosbrink, M. D., and Zhang, J. (2011). Genetically encodable fluorescent biosensors for tracking signaling dynamics in living cells. Chemical reviews 111, 3614-3666.

Nivens, D. E., McKnight, T., Moser, S., Osbourn, S., Simpson, M., and Sayler, G. (2004). Bioluminescent bioreporter integrated circuits: potentially small, rugged and inexpensive whole‐cell biosensors for remote environmental monitoring. Journal of Applied Microbiology 96, 33-46.

Oba, Y., Kato, S.-i., Ojika, M., and Inouye, S. (2002). Biosynthesis of luciferin in the sea firefly, Cypridina hilgendorfii: L-tryptophan is a component in Cypridina luciferin. Tetrahedron letters 43, 2389-2392.

Patterson, S. S., Dionisi, H. M., Gupta, R. K., and Sayler, G. S. (2005). Codon optimization of bacterial luciferase (lux) for expression in mammalian cells. Journal of industrial microbiology and biotechnology 32, 115-123.

Rangaraju, V., Calloway, N., and Ryan, T. A. (2014). Activity-driven local ATP synthesis is required for synaptic function. Cell 156, 825-835.

Regot, S., Hughey, J. J., Bajar, B. T., Carrasco, S., and Covert, M. W. (2014). High-sensitivity measurements of multiple kinase activities in live single cells. Cell 157, 1724-1734.

Roda, A., and Guardigli, M. (2012). Analytical chemiluminescence and bioluminescence: latest achievements and new horizons. Analytical and bioanalytical chemistry 402, 69-76.

Saito, K., Chang, Y., Horikawa, K., Hatsugai, N., Higuchi, Y., Hashida, M., Yoshida, Y., Matsuda, T., Arai, Y., and Nagai, T. (2012). Luminescent proteins for high-speed single-cell and whole-body imaging. Nature communications 3, 1-9.

Schmidt, K. (2010). Food and feeding in Northern krill (Meganyctiphanes norvegica Sars). In "Advances in marine biology", Vol. 57, pp. 127-171. Elsevier.

Shama, G., and Malik, D. J. (2013). The uses and abuses of rapid bioluminescence-based ATP assays. International journal of hygiene and environmental health 216, 115-125.

Shimomura, O. (2006). "Bioluminescence: chemical principles and methods," World Scientific.

Shimomura, O., and Teranishi, K. (2000). Light‐emitters involved in the luminescence of coelenterazine. Luminescence: the journal of biological and chemical luminescence 15, 51-58.

Singh, H., Manuri, P. R., Olivares, S., Dara, N., Dawson, M. J., Huls, H., Hackett, P. B., Kohn, D. B., Shpall, E. J., and Champlin, R. E. (2008). Redirecting specificity of T-cell populations for CD19 using the Sleeping Beauty system. Cancer research 68, 2961-2971.

Skog, J., Würdinger, T., Van Rijn, S., Meijer, D. H., Gainche, L., Curry, W. T., Carter, B. S., Krichevsky, A. M., and Breakefield, X. O. (2008). Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers. Nature cell biology 10, 1470-1476.

Slot, J. C., and Gluck-Thaler, E. (2019). Metabolic gene clusters, fungal diversity, and the generation of accessory functions. Current Opinion in Genetics & Development 58, 17-24.

Spicer, J. I., and Saborowski, R. (2010). Physiology and metabolism of Northern krill (Meganyctiphanes norvegica Sars). In "Advances in marine biology", Vol. 57, pp. 91-126. Elsevier.

Strassburg, K., Huijbrechts, A. M., Kortekaas, K. A., Lindeman, J. H., Pedersen, T. L., Dane, A., Berger, R., Brenkman, A., Hankemeier, T., and van Duynhoven, J. (2012). Quantitative profiling of oxylipins through comprehensive LC-MS/MS analysis: application in cardiac surgery. Analytical and bioanalytical chemistry 404, 1413-1426.

Sun, N., Youle, R. J., and Finkel, T. (2016). The mitochondrial basis of aging. Molecular cell 61, 654-666.

Tannous, B. A., Kim, D.-E., Fernandez, J. L., Weissleder, R., and Breakefield, X. O. (2005). Codon-optimized Gaussia luciferase cDNA for mammalian gene expression in culture and in vivo. Molecular Therapy 11, 435-443.

Teranishi, K., and Shimomura, O. (1997). Coelenterazine analogs as chemiluminescent probe for superoxide anion. Analytical biochemistry 249, 37-43.

Vacher, M., Fdez. Galván, I., Ding, B.-W., Schramm, S., Berraud-Pache, R., Naumov, P., Ferré, N., Liu, Y.-J., Navizet, I., and Roca-Sanjuán, D. (2018). Chemi-and bioluminescence of cyclic peroxides. Chemical reviews 118, 6927-6974.

Wainwright, P. C., and Longo, S. J. (2017). Functional innovations and the conquest of the oceans by acanthomorph fishes. Current Biology 27, R550-R557.

Widder, E. A. (2010). Bioluminescence in the ocean: origins of biological, chemical, and ecological diversity. Science 328, 704-708.

Wilson, T., and Hastings, J. W. (1998). Bioluminescence. Annual review of cell and developmental biology 14, 197-230.

Wu, C., Irie, S., Yamamoto, S., and Ohmiya, Y. (2009). A bioluminescent enzyme immunoassay for prostaglandin E2 using Cypridina luciferase. Luminescence 24, 131-133.

Xing, S., Wallmeroth, N., Berendzen, K. W., and Grefen, C. (2016). Techniques for the analysis of protein-protein interactions in vivo. Plant physiology 171, 727-758.

Xu, T., Close, D., Handagama, W., Marr, E., Sayler, G., and Ripp, S. (2016). The expanding toolbox of in vivo bioluminescent imaging. Frontiers in oncology 6, 150.

Yamada, Y., Nishide, S.-y., Nakajima, Y., Watanabe, T., Ohmiya, Y., Honma, K.-i., and Honma, S. (2013). Monitoring circadian time in rat plasma using a secreted Cypridina luciferase reporter. Analytical biochemistry 439, 80-87.

Yang, N.-C., Ho, W.-M., Chen, Y.-H., and Hu, M.-L. (2002). A convenient one-step extraction of cellular ATP using boiling water for the luciferin–luciferase assay of ATP. Analytical biochemistry 306, 323-327.

Yao, Z., Zhang, B. S., and Prescher, J. A. (2018). Advances in bioluminescence imaging: new probes from old recipes. Current opinion in chemical biology 45, 148-156.

Zhou, X., Mehta, S., and Zhang, J. (2020). Genetically encodable fluorescent and bioluminescent biosensors light up signaling networks. Trends in Biochemical Sciences.

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Published

2020-12-12

How to Cite

Idrees, N., Siddique, A., Fateh, A., Afzal, N., Ali, I., Javied, M., Ali, Q., & Malik, A. (2020). BIOLUMINESCENCE SYSTEMS. Biological and Clinical Sciences Research Journal, 2020(1). https://doi.org/10.54112/bcsrj.v2020i1.42

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