DENDROGRAMIC ANALITICAL STUDY OF REPORTED MASTREVIRUSES INFECTING MALVACEOUS AND FABACEOUS PLANTS USING BIOINFORMATICS TOOLS

Authors

  • M ATIF Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
  • F AHMAD School of Food Sciences and Technology, Minhaj University Lahore, Pakistan
  • MT MANZOOR Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
  • K GILANI Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore Pakistan
  • Q ALI Department of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab Lahore, Pakistan
  • M SARWAR Department of Horticulture, Faculty of Agricultural Sciences, University of the Punjab Lahore, Pakistan
  • S ANJUM Department of Botany, University of the Punjab, Lahore, Pakistan
  • MW ALAM Department of Plant Pathology, University of Okara, Okara, Pakistan
  • A HUSSAIN Department of Agronomy, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

DOI:

https://doi.org/10.54112/bcsrj.v2022i1.117

Keywords:

Virus, biotic, stress, genome, yield loss, pathogen

Abstract

The Chickpea Chlorotic Dwarf Virus (CpCDV) has been found devastating not only for chickpea crop but also for lentils, cotton and papaya. It has been found that up to 95% yield of crop plants have been reduced in dry regions of world including America and Europe. The vector species have also been found to play an important role for spreading of this virus form crop to crop and region to region. In our current study an evolutionary study of about 53 genomes was performed. According to our finding, the CpCDV is an important pathogen not only for the Fabaceae family but also has been reported found in Malvaceae family.

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References

Adams. (2005b). Molecular criteria for genus and species descrimination within the family Potyviridae. Archive of virology, 150, 459-479. DOI: https://doi.org/10.1007/s00705-004-0440-6

Ahmed. (2010). Phylogenetic analysis of Bemisia tabaci (Hemiptera: Aleyrodidae) populations from cotton plants in Pakistan, China, and Egypt . Journal of Pest Science, 14, 135-141. DOI: https://doi.org/10.1007/s10340-009-0279-4

Adams, M.J., Zerbini, F.M., French. R., Rabenstein. F., & Stenger, D.C. (2011). Potyviridae. In: King AM (editor). Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses. London, UK: Elsevier.

Balol, G.B., Divya, B.L., Basavaraj, S., Sundaresha, S, Mahesh, Y.S., & Huchannanavar, S.D. (2010). Sources of genetic variation in plant virus populations. Journal of Pure and Applied Microbiology, 4(2), 803-808.

Berriei, L.C., Rybicki, E.P., Rey, M.E.C. (2001). Complete nucleotide sequence and host range of South African cassava mosaic virus: further evidence for recombination amongst Begomoviruses. Journal of General Virology, 82, 53-58. DOI: https://doi.org/10.1099/0022-1317-82-1-53

Biebricher, C.K., & Eigen, M. (2006). ‘What is a Quasispecies?. Current Topics in Microbiology and Immunology, 299, 1–31. DOI: https://doi.org/10.1007/3-540-26397-7_1

Bonnet, J., Fraile, A., Sacristán, S., Malpica, J.M. &, García-Arenal, F. (2005). Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus. Virology, 332(1) 359-368. DOI: https://doi.org/10.1016/j.virol.2004.11.017

Bisaro. (2006). Silencing suppression by geminivirus proteins. Virology, 158-168. DOI: https://doi.org/10.1016/j.virol.2005.09.041

Botha, A.M. (2010). Transcript profiling of wheat genes expressed during feeding by two different biotypes of Diuraphis noxia . Environmentl Entomoogyl, 39, 1206–1231 . DOI: https://doi.org/10.1603/EN09248

Drake, J.W. (1991). A constant rate of spontaneous mutation in DNA-based microbes. Proceedings of the National Academy of Sciences, 88(16), 7160-7164. DOI: https://doi.org/10.1073/pnas.88.16.7160

Duffy, S., & Holmes, E.C. (2008). Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus Tomato yellow leaf curl virus. Journal of General Virology, 82, 957-965. DOI: https://doi.org/10.1128/JVI.01929-07

Duffy, S., Shackelton, L.A., & Holmes, E.C. (2008). Rates of evolutionary change in viruses: patterns and determinants. Nature Reverse Genetics, 9, 267-276. DOI: https://doi.org/10.1038/nrg2323

Eigen, M., Winkler-Oswatitsch, R., Dress, A. (1988). Statistical geometry in sequence space: a method of quantitative comparative sequence analysis. Science USA, 85, 5913-5917. DOI: https://doi.org/10.1073/pnas.85.16.5913

Fan, J., Negroni, M., & Robertson, D.L. (2007). ‘The Distribution of HIV-1 Recombination Breakpoints’. Infection Genetics and Evolution, 7, 717-723. DOI: https://doi.org/10.1016/j.meegid.2007.07.012

Ge, L., Zhang, J., Zhou, X., & Li, H. (2007). Genetic structure and population variability of tomato yellow leaf curl China virus. Journal of virology, 81(11), 5902-5907. DOI: https://doi.org/10.1128/JVI.02431-06

Grigoras, I., Timchenko, T., Grande-Pérez, A., Katul, L., Vetten, H.J., & Gronenborn, B. (2010). High variability and rapid evolution of a nanovirus. Journal of virology, 84(18), 9105-9117. DOI: https://doi.org/10.1128/JVI.00607-10

Heath, L., Van Der Walt, E., Varsani, A., & Martin, D.P. (2006). Recombination patterns in aphthoviruses mirror those found in other picornaviruses. Journal of virology, 80(23), 11827-11832. DOI: https://doi.org/10.1128/JVI.01100-06

Holland, J., Spindler, K., Horodyski, F., Grabau, E., Nichol, S., & Vande Pol, S. (1982). Rapid evolution of RNA genomes. Science, 215(4540), 1577-1585. DOI: https://doi.org/10.1126/science.7041255

Jeske, H., Lutgemeier, M., & Preiss, W. (2001). DNA Forms Indicate Rolling Circle and Recombination-Dependent Replication of Abutilon Mosaic Virus, EMBO Journal, 20: 6158-6167. DOI: https://doi.org/10.1093/emboj/20.21.6158

Kumarvinoth, Tribhuwan, Y.V., & SaumikBasu. (2015). Complexity of Begomovirus and betasatellite populations associated with chili leaf curl disease in India. Journal of General Virology, 96, 3143-3158. DOI: https://doi.org/10.1099/jgv.0.000254

Kumar, S., Stecher, G., & Tamura, K. (2016). MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology Evolution, 33, 1870-1874. doi: 10.1093/molbev/msw054. DOI: https://doi.org/10.1093/molbev/msw054

Lefeuvre., & Moriones. (2015). Recombination as a motor of host switches and virus emergence: Geminiviruses as case studies. Current Opinion in Virology,10, 14-19. DOI: https://doi.org/10.1016/j.coviro.2014.12.005

Monci, F., Sánchez-Campos, S., Navas-Castillo, J., & Moriones, E. (2002). A natural recombinant between the geminiviruses Tomato yellow leaf curl Sardinia virus and Tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations. Virology, 303(2), 317-326. DOI: https://doi.org/10.1006/viro.2002.1633

Muhire, B. M., Varsani, A., & Martin, D. P. (2014). SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PloS one, 9(9), e108277. DOI: https://doi.org/10.1371/journal.pone.0108277

Ong, C.A., Varghese, G., & Ting, W.P. (1980). The effect of chilli veinal mottle virus on yield of chilli (Capsicum annuum L. MARDI Research Bulletin., 8(1), 74-78.

Rajamaki, M.L, Maki-Valkama, T., Makinen, K., & Valkonen, J. P. (2009). Infection with potyviruses. Annual Plant Reviews, Plant-Pathogen Interactions, 11, 68. DOI: https://doi.org/10.1002/9781119312994.apr0103

Sanz, A. I., Fraile, A., Garcı́a-Arenal, F., Zhou, X., Robinson, D. J., Khalid, S., & Harrison, B. D. (2000). Multiple infection, recombination and genome relationships among begomovirus isolates found in cotton and other plants in Pakistan. Journal of General Virology, 81(7), 1839-1849. DOI: https://doi.org/10.1099/0022-1317-81-7-1839

Shackelton, & Holmes, E.C. (2006). Phylogenetic Evidence for the Rapid Evolution of Human B19 Erythrovirus. Journal of Virology, 80, 3666-3669. DOI: https://doi.org/10.1128/JVI.80.7.3666-3669.2006

Shackelton, L.A., Parrish, C.R., Truyen, U., & Holmes, E.C. (2005). High rate of viral evolution associated with the emergence of carnivore parvovirus. Proceedings of the National Academy of Sciences, 102(2), 379-384. DOI: https://doi.org/10.1073/pnas.0406765102

Silva, F.N., Lima, A.T., Rocha, C.S., Castillo-Urquiza, G.P., Alves-Júnior, M., & Zerbini, F.M. (2014). Recombination and pseudorecombination driving the evolution of the begomoviruses Tomato severe rugose virus (ToSRV) and Tomato rugose mosaic virus (ToRMV): two recombinant DNA-A components sharing the same DNA-B. Virology journal, 11(1), 1-11. DOI: https://doi.org/10.1186/1743-422X-11-66

Varsani, A., Shepherd, D. N., Monjane, A. L., Owor, B. E., Erdmann, J. B., Rybicki, E. P., ... & Martin, D. P. (2008). Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen. The Journal of general virology, 89(Pt 9), 2063. DOI: https://doi.org/10.1099/vir.0.2008/003590-0

Varsani, A., van der Walt, E., Heath, L., Rybicki, E. P., Williamson, A. L., & Martin, D. P. (2006). Evidence of ancient papillomavirus recombination. Journal of General Virology, 87(9), 2527-2531. DOI: https://doi.org/10.1099/vir.0.81917-0

Worobey, M., & Holmes, E.C. (1999). Evolutionary Aspects of Recombination in RNA Viruses. Journal of General Virology, 80, 2535-2545. DOI: https://doi.org/10.1099/0022-1317-80-10-2535

Zhou, X., Liu, Y., Calvert, L., Munoz, C., Otim-Nape, G.W., Robinson, D.J., & Harrison, B.D. (1997). Evidence that DNA-A of a geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination. Journal General Virology, 78(8), 2101-2111. DOI: https://doi.org/10.1099/0022-1317-78-8-2101

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Published

2022-10-12

How to Cite

1.
ATIF M, AHMAD F, MANZOOR M, GILANI K, ALI Q, SARWAR M, et al. DENDROGRAMIC ANALITICAL STUDY OF REPORTED MASTREVIRUSES INFECTING MALVACEOUS AND FABACEOUS PLANTS USING BIOINFORMATICS TOOLS. Biol Clin Sci Res J [Internet]. 2022 Oct. 12 [cited 2026 Apr. 15];2022(1). Available from: https://bcsrj.com/ojs/index.php/bcsrj/article/view/117

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