DENDROGRAMIC ANALITICAL STUDY OF REPORTED MASTREVIRUSES INFECTING MALVACEOUS AND FABACEOUS PLANTS USING BIOINFORMATICS TOOLS
DOI:
https://doi.org/10.54112/bcsrj.v2022i1.117Keywords:
Virus, biotic, stress, genome, yield loss, pathogenAbstract
The Chickpea Chlorotic Dwarf Virus (CpCDV) has been found devastating not only for chickpea crop but also for lentils, cotton and papaya. It has been found that up to 95% yield of crop plants have been reduced in dry regions of world including America and Europe. The vector species have also been found to play an important role for spreading of this virus form crop to crop and region to region. In our current study an evolutionary study of about 53 genomes was performed. According to our finding, the CpCDV is an important pathogen not only for the Fabaceae family but also has been reported found in Malvaceae family.
Downloads
References
Adams. (2005b). Molecular criteria for genus and species descrimination within the family Potyviridae. Archive of virology, 150, 459-479. DOI: https://doi.org/10.1007/s00705-004-0440-6
Ahmed. (2010). Phylogenetic analysis of Bemisia tabaci (Hemiptera: Aleyrodidae) populations from cotton plants in Pakistan, China, and Egypt . Journal of Pest Science, 14, 135-141. DOI: https://doi.org/10.1007/s10340-009-0279-4
Adams, M.J., Zerbini, F.M., French. R., Rabenstein. F., & Stenger, D.C. (2011). Potyviridae. In: King AM (editor). Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses. London, UK: Elsevier.
Balol, G.B., Divya, B.L., Basavaraj, S., Sundaresha, S, Mahesh, Y.S., & Huchannanavar, S.D. (2010). Sources of genetic variation in plant virus populations. Journal of Pure and Applied Microbiology, 4(2), 803-808.
Berriei, L.C., Rybicki, E.P., Rey, M.E.C. (2001). Complete nucleotide sequence and host range of South African cassava mosaic virus: further evidence for recombination amongst Begomoviruses. Journal of General Virology, 82, 53-58. DOI: https://doi.org/10.1099/0022-1317-82-1-53
Biebricher, C.K., & Eigen, M. (2006). ‘What is a Quasispecies?. Current Topics in Microbiology and Immunology, 299, 1–31. DOI: https://doi.org/10.1007/3-540-26397-7_1
Bonnet, J., Fraile, A., Sacristán, S., Malpica, J.M. &, García-Arenal, F. (2005). Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus. Virology, 332(1) 359-368. DOI: https://doi.org/10.1016/j.virol.2004.11.017
Bisaro. (2006). Silencing suppression by geminivirus proteins. Virology, 158-168. DOI: https://doi.org/10.1016/j.virol.2005.09.041
Botha, A.M. (2010). Transcript profiling of wheat genes expressed during feeding by two different biotypes of Diuraphis noxia . Environmentl Entomoogyl, 39, 1206–1231 . DOI: https://doi.org/10.1603/EN09248
Drake, J.W. (1991). A constant rate of spontaneous mutation in DNA-based microbes. Proceedings of the National Academy of Sciences, 88(16), 7160-7164. DOI: https://doi.org/10.1073/pnas.88.16.7160
Duffy, S., & Holmes, E.C. (2008). Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus Tomato yellow leaf curl virus. Journal of General Virology, 82, 957-965. DOI: https://doi.org/10.1128/JVI.01929-07
Duffy, S., Shackelton, L.A., & Holmes, E.C. (2008). Rates of evolutionary change in viruses: patterns and determinants. Nature Reverse Genetics, 9, 267-276. DOI: https://doi.org/10.1038/nrg2323
Eigen, M., Winkler-Oswatitsch, R., Dress, A. (1988). Statistical geometry in sequence space: a method of quantitative comparative sequence analysis. Science USA, 85, 5913-5917. DOI: https://doi.org/10.1073/pnas.85.16.5913
Fan, J., Negroni, M., & Robertson, D.L. (2007). ‘The Distribution of HIV-1 Recombination Breakpoints’. Infection Genetics and Evolution, 7, 717-723. DOI: https://doi.org/10.1016/j.meegid.2007.07.012
Ge, L., Zhang, J., Zhou, X., & Li, H. (2007). Genetic structure and population variability of tomato yellow leaf curl China virus. Journal of virology, 81(11), 5902-5907. DOI: https://doi.org/10.1128/JVI.02431-06
Grigoras, I., Timchenko, T., Grande-Pérez, A., Katul, L., Vetten, H.J., & Gronenborn, B. (2010). High variability and rapid evolution of a nanovirus. Journal of virology, 84(18), 9105-9117. DOI: https://doi.org/10.1128/JVI.00607-10
Heath, L., Van Der Walt, E., Varsani, A., & Martin, D.P. (2006). Recombination patterns in aphthoviruses mirror those found in other picornaviruses. Journal of virology, 80(23), 11827-11832. DOI: https://doi.org/10.1128/JVI.01100-06
Holland, J., Spindler, K., Horodyski, F., Grabau, E., Nichol, S., & Vande Pol, S. (1982). Rapid evolution of RNA genomes. Science, 215(4540), 1577-1585. DOI: https://doi.org/10.1126/science.7041255
Jeske, H., Lutgemeier, M., & Preiss, W. (2001). DNA Forms Indicate Rolling Circle and Recombination-Dependent Replication of Abutilon Mosaic Virus, EMBO Journal, 20: 6158-6167. DOI: https://doi.org/10.1093/emboj/20.21.6158
Kumarvinoth, Tribhuwan, Y.V., & SaumikBasu. (2015). Complexity of Begomovirus and betasatellite populations associated with chili leaf curl disease in India. Journal of General Virology, 96, 3143-3158. DOI: https://doi.org/10.1099/jgv.0.000254
Kumar, S., Stecher, G., & Tamura, K. (2016). MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology Evolution, 33, 1870-1874. doi: 10.1093/molbev/msw054. DOI: https://doi.org/10.1093/molbev/msw054
Lefeuvre., & Moriones. (2015). Recombination as a motor of host switches and virus emergence: Geminiviruses as case studies. Current Opinion in Virology,10, 14-19. DOI: https://doi.org/10.1016/j.coviro.2014.12.005
Monci, F., Sánchez-Campos, S., Navas-Castillo, J., & Moriones, E. (2002). A natural recombinant between the geminiviruses Tomato yellow leaf curl Sardinia virus and Tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations. Virology, 303(2), 317-326. DOI: https://doi.org/10.1006/viro.2002.1633
Muhire, B. M., Varsani, A., & Martin, D. P. (2014). SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PloS one, 9(9), e108277. DOI: https://doi.org/10.1371/journal.pone.0108277
Ong, C.A., Varghese, G., & Ting, W.P. (1980). The effect of chilli veinal mottle virus on yield of chilli (Capsicum annuum L. MARDI Research Bulletin., 8(1), 74-78.
Rajamaki, M.L, Maki-Valkama, T., Makinen, K., & Valkonen, J. P. (2009). Infection with potyviruses. Annual Plant Reviews, Plant-Pathogen Interactions, 11, 68. DOI: https://doi.org/10.1002/9781119312994.apr0103
Sanz, A. I., Fraile, A., Garcı́a-Arenal, F., Zhou, X., Robinson, D. J., Khalid, S., & Harrison, B. D. (2000). Multiple infection, recombination and genome relationships among begomovirus isolates found in cotton and other plants in Pakistan. Journal of General Virology, 81(7), 1839-1849. DOI: https://doi.org/10.1099/0022-1317-81-7-1839
Shackelton, & Holmes, E.C. (2006). Phylogenetic Evidence for the Rapid Evolution of Human B19 Erythrovirus. Journal of Virology, 80, 3666-3669. DOI: https://doi.org/10.1128/JVI.80.7.3666-3669.2006
Shackelton, L.A., Parrish, C.R., Truyen, U., & Holmes, E.C. (2005). High rate of viral evolution associated with the emergence of carnivore parvovirus. Proceedings of the National Academy of Sciences, 102(2), 379-384. DOI: https://doi.org/10.1073/pnas.0406765102
Silva, F.N., Lima, A.T., Rocha, C.S., Castillo-Urquiza, G.P., Alves-Júnior, M., & Zerbini, F.M. (2014). Recombination and pseudorecombination driving the evolution of the begomoviruses Tomato severe rugose virus (ToSRV) and Tomato rugose mosaic virus (ToRMV): two recombinant DNA-A components sharing the same DNA-B. Virology journal, 11(1), 1-11. DOI: https://doi.org/10.1186/1743-422X-11-66
Varsani, A., Shepherd, D. N., Monjane, A. L., Owor, B. E., Erdmann, J. B., Rybicki, E. P., ... & Martin, D. P. (2008). Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen. The Journal of general virology, 89(Pt 9), 2063. DOI: https://doi.org/10.1099/vir.0.2008/003590-0
Varsani, A., van der Walt, E., Heath, L., Rybicki, E. P., Williamson, A. L., & Martin, D. P. (2006). Evidence of ancient papillomavirus recombination. Journal of General Virology, 87(9), 2527-2531. DOI: https://doi.org/10.1099/vir.0.81917-0
Worobey, M., & Holmes, E.C. (1999). Evolutionary Aspects of Recombination in RNA Viruses. Journal of General Virology, 80, 2535-2545. DOI: https://doi.org/10.1099/0022-1317-80-10-2535
Zhou, X., Liu, Y., Calvert, L., Munoz, C., Otim-Nape, G.W., Robinson, D.J., & Harrison, B.D. (1997). Evidence that DNA-A of a geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination. Journal General Virology, 78(8), 2101-2111. DOI: https://doi.org/10.1099/0022-1317-78-8-2101
Downloads
Published
How to Cite
Issue
Section
Categories
License
Copyright (c) 2022 M ATIF, F AHMAD, MT MANZOOR, K GILANI, Q ALI, M SARWAR, S ANJUM, MW ALAM, A HUSSAIN

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.






